Meiler Lab

BCL::PDBConvert identifies and fixes formatting violations and inconsistencies within a pdb file. It can also generate symmetry-related biomolecules, ROSETTA formatted files for loop building, renumber residues consecutively or according to sequence information, convert unnatural amino acids to their natural counterparts, strip-off or add amino acid side chains, and construct pdbs compliant with the Transmembrane Protein Data Bank (PDBTM) using a PDBTM-xml file.

Files are limited to 4MB in size; if you are a Meiler-Lab member, please login to upload files up to 16MB

Input PDB *

Browse for a file with one of these extensions: .pdb or .pdb.bz2

Write FASTA File

Output chain ids

Idealize SSEs

REMARK 350 biomolecule id to generate

Rename Chain IDs

Add side chains

Amino acid description level *

Minimum # of residues per added helix *

Minimum # of residues per added strand *

Minimum # of residues per added loop *

Convert to natural AA type

Keep residue IDs from input PDB

Keep atom IDs from input PDB

Rosetta loop file format

Write undefined AAs with zero coordinates

Email address

Customize Subject

HTML email

Center for Structural Biology
465 21st Ave South, BIOSCI/MRBIII
Vanderbilt University, Nashville, TN