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Gordon Lemmon, Jens Meiler
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| Rosetta Ligand Docking with Flexible XML Protocols |
| Methods in Molecular Biology |
|
Miyeon Kima, Sergey A. Vishnivetskiy, Ned Van Eps, Nathan S. Alexander, Whitney M. Cleghorn, Xuanzhi Zhan, Susan M. Hanson, Takefumi Morizumi, Oliver P. Ernst, Jens Meiler, Vsevolod V. Gurevichc, and Wayne L. Hubbella
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| Conformation of receptor-bound visual arrestin |
| PNAS |
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Simone Eisenbeis, William Proffitt, Murray Coles, Vincent Truffault, Sooruban Shanmugaratnam, Jens Meiler, Birte Hoecker
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| Potential of fragment recombination for rational design of proteins |
| J. Am. Chem. Soc. |
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Steffen Lindert, Nathan Alexander, Nils Woetzel, Mert Karakas, Phoebe L. Stewart, Jens Meiler
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| EM-Fold: De Novo Atomic-Detail Protein Structure Determination from Medium-Resolution Density Maps |
| Structure |
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Daniel Rathmann, Diana Lindner, Stephanie H. DeLuca, Kristian W. Kaufmann, Jens Meiler and Annette G. Beck-Sickinger
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| Ligand mimicking receptor variant discloses binding and activation mode of prolactin releasing peptide |
| J Biochemistry |
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Findeisen Maria, Wuerker Caecilia, Daniel Rathmann, Meier Rene, Jens Meiler, Roger Olsson, Annette G. Beck-Sickinger
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| Selective mode of action of guanidine containing non peptides at human NPFF receptors |
| J Med Chem |
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Yang R, Shi J, Byeon IJ, Ahn J, Sheehan JH, Meiler J, Gronenborn AM, Aiken C
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| Second-site suppressors of HIV-1 capsid mutations: restoration of intracellular activities without correction of intrinsic capsid stability defects |
| Retrovirology |
|
Philipp Schmidt, Lars Ritscher, Elizabeth N. Dong, Thomas Hermsdorf, Maxi Cöster, Doreen Wittkopf, Jens Meiler and Torsten Schoeneberg
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| Identification of Determinants Required for Agonistic and Inverse Agonistic Ligand Properties at the ADP Receptor P2Y12 |
| Mol Pharmacol |
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Nils Woetzel, Mert KarakaS, Rene Staritzbichler, Ralf Mueller, Brian E. Weiner, Jens Meiler
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| BCL::Score-Knowledge Based Energy Potentials for Ranking Protein Models Represented by Idealized Secondary Structure Elements |
| PLOS One |
|
Mert Karakas, Nils Woetzel, Rene Staritzbichler, Nathan Alexander, Brian E. Weiner, Jens Meiler
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| BCL::Fold - De Novo Prediction of Complex and Large Protein Topologies by Assembly of Secondary Structure Elements |
| PLOS One |
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Kristian W. Kaufmann, Jens Meiler
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| Using RosettaLigand for Small Molecule Docking into Comparative Models |
| PLOS One |
|
Ralf Mueller, Eric S. Dawson, Jens Meiler, Alice L. Rodriguez, Brian A. Chauder, Brittney S. Bates, Andrew S. Felts, Jeffrey P. Lamb, Usha N. Menon, Sataywan B. Jadhav, Alexander S. Kane, Carrie K. Jones, Karen J. Gregory, Colleen M. Niswender, P. Jeffrey Conn, Christopher M. Olsen, Danny G. Winder, Kyle A. Emmitte, Craig W. Lindsley
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| Discovery of 2-(2-Benzoxazoyl amino)-4 Aryl-5-Cyanopyrimidine as Negative Allosteric Modulators (NAMs) of Metabotropic Glutamate Receptor 5 (mGlu5): From an Artificial Neural Network Virtual Screen to an In Vivo Tool Compound |
| ChemMedChem |
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Mariusz Butkiewicz, Edward W. Lowe, Jr. and Jens Meiler
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| Bcl::ChemInfo - Qualitative Analysis Of Machine Learning Models For Activation Of HSD Involved In Alzheimer’s Disease |
| Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), IEEE Symposium |
|
Gordon Lemmon, Kristian Kaufmann, Jens Meiler
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| Prediction of HIV-1 Protease/Inhibitor Affinity using RosettaLigand |
| Chemical Biology & Drug Design |
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Greg Sliwoski, Edward W. Lowe, Jr., Mariusz Butkiewicz, Jens Meiler
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| BCL::EMAS Enantioselective Molecular Asymmetry Descriptor for 3D-QSAR |
| Molecules |
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Ralf Mueller, Eric S. Dawson, Colleen M. Niswender, Mariusz Butkiewicz, Corey R. Hopkins, C. David Weaver, Craig W. Lindsley, P. Jeffrey Conn, Jens Meiler
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| Iterative experimental and virtual high-throughput screening identifies metabotropic glutamate receptor subtype 4 positive allosteric modulators |
| J Mol Model |
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Steffen Lindert, Tommy Hofman, Nils Woetzel, Mert Karakas, Phoebe L. Stewart, Jens Meiler
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| Ab initio protein modeling into cryoEM density maps using EM-Fold |
| Biopolymers |
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Edward W. Lowe, Jr., Mariusz Butkiewicz, Zollie White III, Matthew Spellings, Albert Omlor, Jens Meiler
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| Comparative Analysis of Machine Learning Techniques for the Prediction of the DMPK Parameters Intrinsic Clearance and Plasma Protein Binding |
| Proceedings of 4th International Conference on Bioinformatics and Computational Biology 2012 |
|
Mariusz Butkiewicz, Edward W. Lowe, Jr., Jens Meiler
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| Bcl::ChemInfo - Qualitative Analysis Of Machine Learning Models For Activation Of HSD Involved In Alzheimer’s Disease |
| Proceedings of 2012 IEEE Symposium on Computational Intelligence and Computational Biology |
|
Edward W. Lowe, Jr., Mariusz Butkiewicz, Nils Woetzel, Jens Meiler
|
| GPU-Accelerated Machine Learning Techniques Enable QSAR Modeling Of Large HTS Data |
| Proceedings of 2012 IEEE Symposium on Computational Intelligence and Computational Biology |
|
Edward W. Lowe, Mariusz Butkiewicz, Zollie White III, Matthew Spellings, Albert Omlor, and Jens Meiler
|
| Comparative Analysis of Machine Learning Techniques for the Prediction of the DMPK Parameters Intrinsic Clearance and Plasma Protein Binding |
| Proceedings of 4th International Conference on Bioinformatics and Computational Biology |
